Graph Database Connector (graphdb_connector)

connector.py

getGraphDatabaseConnectionConfiguration(configuration=None, database=None)

connectToDB(host='localhost', port=7687, user='neo4j', password='password')

removeRelationshipDB(entity1, entity2, relationship)

modifyEntityProperty(parameters)

parameters: tuple with entity name, entity id, property name to modify, and value

sendQuery(driver, query, parameters={})

getCursorData(driver, query, parameters={})

create_node(driver, node_type, **kwargs)

find_node(driver, node_type, **kwargs)

run_query(query, parameters={})

query_utils.py

read_knowledge_queries(dataset_type='proteomics')

read_queries(queries_file)

list_queries(queries)

find_queries_involving_nodes(queries, nodes, print_pretty=False)

find_queries_involving_relationships(queries, rels)

get_query(queries, query_id)

get_description(query)

get_nodes(query)

get_relationships(query)

map_node_name_to_id(driver, node, value)